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HESI A2 · Chemistry · 6 min read · Open lesson

Atomic Structure and Isotopes

In this lesson you will
  • Differentiate between protons, neutrons, and electrons in terms of electrical charge, mass, and location within the atom.
  • Calculate subatomic particles using atomic number, mass number, and standard isotopic notation, and explain the nature of isotopes.
  • Describe electron arrangement across principal energy levels, subshells, and orbitals, and relate valence electrons to the octet rule and chemical reactivity.

Fundamental Subatomic Particles and Atomic Architecture

Every atom contains protons and electrons, and most atoms also contain neutrons. These three subatomic particles establish the fundamental physical structure and electrical characteristics of matter. Protons carry a single unit of positive electrical charge (+1), whereas electrons carry a single unit of negative electrical charge (-1). Neutrons are electrically neutral and possess a charge of zero. In an electrically neutral atom, the number of protons equals the number of electrons, resulting in a balanced electrical state.

The physical distribution of these particles creates two distinct regions within the atom. Protons and neutrons reside together in the dense, central nucleus of an atom. Electrons occupy orbitals, regions around the nucleus where they are likely to be found, that are grouped into energy levels. The mass of an atom is partitioned unevenly between these domains. A proton has a mass of approximately one atomic mass unit (amu), and a neutron has a mass of approximately one atomic mass unit (amu). By comparison, an electron has about 1/1836 the mass of a proton, meaning its contribution to atomic mass is usually negligible. Consequently, the vast majority of an atom's mass is concentrated within its nucleus, whereas the electron cloud accounts for almost all of an atom's total volume.

While neutral atoms maintain identical counts of positive and negative charges, atoms can also gain or lose electrons. An ion is an atom or group of atoms with a net electric charge because its total number of electrons differs from its total number of protons. A cation is a positively charged ion, which an atom forms by losing one or more electrons. An anion is a negatively charged ion, which an atom forms by gaining one or more electrons. In both cases, the nuclear core remains unaltered while the surrounding electron count changes.

Comparison of Fundamental Subatomic Particles
ParticleElectrical ChargeApproximate MassLocation in Atom
Proton+1Approximately 1 amuDense, central nucleus
Neutron0Approximately 1 amuDense, central nucleus
Electron-1Negligible (about 1/1836 the mass of a proton)Orbitals within the electron cloud
Exam tip. When an individual atom becomes an ion by gaining or losing electrons, the number of protons in its nucleus does not change; protons can transfer between species in acid, base reactions. A cation forms by losing negative electrons, leaving behind an excess of positive protons. An anion forms by gaining negative electrons. Never alter the proton count to explain an electrical charge.

Atomic Number, Mass Number, and Standard Isotopic Notation

The atomic number, represented by the symbol Z, is the number of protons in an atom's nucleus. This value is critical because the atomic number defines the chemical identity of an element. All atoms of the same chemical element contain identical numbers of protons. Because each element has a distinct proton count, elements on the periodic table are organized in order of increasing atomic number.

While the atomic number accounts only for protons, the mass number accounts for all heavy nuclear constituents. The mass number, represented by the symbol A, is the total number of protons and neutrons in an atom. Because electrons contribute a negligible amount of mass, the mass number reflects the total nuclear particle count. The number of neutrons in an atom is calculated by subtracting the atomic number from the mass number.

Scientists record these values clearly using standard isotopic notation. In standard isotopic notation, the mass number is written as a superscript to the left of the chemical symbol, and the atomic number is written as a subscript to the left of the chemical symbol. This format provides immediate access to the atom's nuclear parameters: the lower subscript gives the proton count Z, the upper superscript gives the total particle count A, and the difference between the two yields the neutron count.

Exam tip. In standard isotopic notation, the upper number is always the mass number (A) and the lower number is always the atomic number (Z). To quickly determine the number of neutrons, subtract the bottom subscript from the top superscript.

Isotopes, Atomic Mass Units, and Radioactivity

Although all atoms of the same chemical element share the exact same number of protons, their neutron counts can differ. Isotopes are atoms of the same element that have identical numbers of protons but different numbers of neutrons. Because they possess different numbers of neutrons, isotopes of an element have different mass numbers. Neutral atoms of an element's different isotopes have the same electron configuration and nearly identical chemical properties, but they can differ in physical properties, such as density.

Hydrogen serves as a prime example of isotopic variation. Protium is the most common isotope of hydrogen and contains one proton and zero neutrons. Deuterium is a hydrogen isotope that contains one proton and one neutron. Tritium is a radioactive hydrogen isotope that contains one proton and two neutrons. Tritium demonstrates that certain isotopic configurations are unstable; radioisotopes are unstable isotopes that undergo spontaneous radioactive decay, emitting particles and/or electromagnetic radiation.

Many naturally occurring elements are mixtures of isotopes, although some have only one naturally occurring isotope; chemists use standardized mass units to compare atomic masses. One atomic mass unit (amu) is defined as exactly one-twelfth the mass of a free, neutral carbon-12 atom in its ground state. The average atomic mass of an element is the weighted average of the atomic masses of its naturally occurring isotopes. Average atomic mass is calculated by multiplying each isotope's mass by its fractional abundance and summing the products.

Electron Energy Levels, Subshells, and Orbitals

Electrons occupy discrete energy levels designated by the principal quantum number (n). The maximum number of electrons permitted in a principal energy level is determined by the formula 2n^2. Using this relationship, the first principal energy level (n = 1) can hold a maximum of 2 electrons. The second principal energy level (n = 2) can hold a maximum of 8 electrons. The third principal energy level (n = 3) can hold a maximum of 18 electrons.

Principal energy levels are divided into subshells labeled as s, p, d, and f. Each subshell contains a specific number of orbitals, which are regions where electrons are likely to be found. An s subshell contains one orbital and can hold a maximum of 2 electrons. A p subshell contains three orbitals and can hold a maximum of 6 electrons. A d subshell contains five orbitals and can hold a maximum of 10 electrons. An f subshell contains seven orbitals and can hold a maximum of 14 electrons.

The distribution of electrons across these spaces follows three fundamental principles. The Aufbau principle states that electrons fill lower-energy atomic orbitals before occupying higher-energy ones. The Pauli exclusion principle states that an atomic orbital can hold at most two electrons, which must have opposite spins. Hund's rule states that electrons occupy degenerate orbitals singly with parallel spins before pairing up.

Exam tip. Be careful when an exam asks for electron capacities. A single orbital always holds at most 2 electrons regardless of whether it is an s, p, d, or f orbital. In contrast, subshells hold 2, 6, 10, or 14 electrons depending on their orbital count, and principal energy levels hold up to 2n^2 electrons.

Valence Electrons, Chemical Reactivity, and the Octet Rule

Electrons within an atom are categorized based on their energetic position. Core electrons are the inner electrons that do not participate directly in chemical bonding. Valence electrons are electrons available for chemical bonding; in main-group atoms, they occupy the outermost principal energy level. Because they reside on the periphery of the atom, valence electrons primarily dictate the chemical reactivity and bonding characteristics of an element.

The arrangement of the periodic table directly mirrors valence electron distribution. Main-group elements in the same column of the periodic table generally have the same number of valence electrons, which accounts for their similar bonding tendencies; helium is an exception to this general pattern. Lewis dot structures visually represent valence electrons as dots surrounding an element's chemical symbol, providing a clear map of the electrons available for reactions.

Chemical stability is described by the octet rule, which states that atoms generally react to achieve a stable valence shell of eight electrons. Noble gases generally have low chemical reactivity because their outer electron shells are filled. Helium is a stable noble gas with a complete valence shell containing only 2 electrons, while other noble gases achieve low reactivity with an outer shell of eight electrons.

Common mistakes

  • Confusing the mass number with the atomic number or the average atomic mass. The mass number is an integer equal to protons plus neutrons for a specific atom, whereas the atomic number is the count of protons alone, and the average atomic mass is a weighted average of naturally occurring isotopes.
  • Believing that ion formation involves changing the number of protons. The number of protons in an atom’s nucleus defines its element and does not change during ordinary chemical reactions; ions can form through electron transfer or, for polyatomic species, proton transfer.
  • Assuming that different isotopes of an element have different chemical properties. Because isotopes share the same atomic number and electron configuration, their chemical properties are nearly identical, even though differences in neutron count alter their mass numbers and physical properties like density.
  • Confusing the electron capacity of an individual orbital with that of a subshell or principal energy level. Any single orbital holds a maximum of 2 electrons, whereas subshells hold 2, 6, 10, or 14 electrons, and principal energy levels hold up to 2n^2 electrons.

Summary

  • Atoms consist of a dense central nucleus containing positively charged protons (+1) and neutral neutrons (0), surrounded by an electron cloud of negatively charged electrons (-1) that accounts for almost all atomic volume.
  • The atomic number (Z) is the number of protons and defines the chemical identity of an element, while the mass number (A) is the total count of protons and neutrons.
  • Isotopes are atoms of the same element with identical proton counts but different neutron counts; they have nearly identical chemical properties but can differ in physical properties such as density.
  • Average atomic mass is the weighted average of naturally occurring isotopes calculated from their masses and fractional abundances, based on the atomic mass unit defined by carbon-12.
  • Electrons reside in principal energy levels (holding up to 2n^2 electrons) and s, p, d, and f subshells, filling orbitals according to the Aufbau principle, Pauli exclusion principle, and Hund's rule.
  • In main-group atoms, valence electrons occupy the outermost principal energy level and strongly influence chemical reactivity; the octet rule describes many, but not all, stable bonding arrangements.

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Original lesson written for HESI A2 practice · updated October 30, 2026. Exam names are trademarks of their owners; tests.global is not affiliated with them.